SMTL ID : 6w9c.1

The crystal structure of papain-like protease of SARS CoV-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-trimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.189, T.191, C.192, C.224 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.189, A:C.192 ZN.3: 2 residues within 4Å: Chain B: C.189, C.192 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:C.189, B:C.192 ZN.5: 5 residues within 4Å: Chain A: Q.269, C.270 Chain B: Q.269, C.270 Chain C: C.270 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 1 interactions with chain C Metal complexes: B:C.270, A:C.270, C:C.270 ZN.6: 4 residues within 4Å: Chain C: C.189, T.191, C.192, C.224 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.189, C:C.192, C:C.224

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 7 residues within 4Å: Chain A: C.111, A.114, T.115, Y.273, I.285, D.286, G.287 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain B: A.114, T.115, I.285, D.286, G.287 Ligand excluded by PLIP CL.7: 6 residues within 4Å: Chain C: C.111, A.114, T.115, Y.273, I.285, G.287 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osipiuk, J. et al., The crystal structure of papain-like protease of SARS CoV-2. to be published

Release Date

2020-04-01

Peptides

Non-structural protein 3: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Non-structural protein 3