SMTL ID : 6w9k.1

Structure of the Ancestral Glucocorticoid Receptor 2 ligand binding domain in complex with Prednisolone and PGC1a coregulator fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x TUA: prednisolone(Non-covalent)

TUA.1: 21 residues within 4Å: Chain A: M.32, L.35, N.36, L.38, G.39, Q.42, W.72, M.73, M.76, A.77, L.80, R.83, F.95, Q.114, M.118, L.204, F.207, C.208, T.211, V.219, F.221 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.35, A:W.72, A:M.76, A:F.207 Hydrogen bonds: A:N.36, A:N.36, A:N.36, A:Q.42, A:R.83, A:Q.114, A:Q.114 Water bridges: A:L.80

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: E.12, P.13, V.15, S.79, W.82, R.83, Y.132, Y.135 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.12, A:S.79, A:R.83, A:Y.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, X. et al., Disruption of a key ligand-H-bond network drives dissociative properties in vamorolone for Duchenne muscular dystrophy treatment. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-11-04

Peptides

Glucocorticoid Receptor: A
Peroxisome proliferator-activated receptor gamma coactivator 1-alpha: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glucocorticoid Receptor

Peroxisome proliferator-activated receptor gamma coactivator 1-alpha

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