SMTL ID : 6w9s.1

Crystal structure of an OTU deubiquitinase from Escherichia albertii bound to ubiquitin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

3 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 2 residues within 4Å: Chain A: D.27, Y.30 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.27, A:D.29 FMT.2: 5 residues within 4Å: Chain A: E.151 Chain B: I.46, A.48, G.49, H.70 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.49 FMT.3: 2 residues within 4Å: Chain B: T.24, E.26 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.24 Water bridges: B:T.24, B:T.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schubert, A.F. et al., Identification and characterization of diverse OTU deubiquitinases in bacteria. Embo J. (2020)

Release Date

2020-07-01

Peptides

OTU domain-containing protein EschOTU: A
Ubiquitin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

OTU domain-containing protein EschOTU

Ubiquitin

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