SMTL ID : 6wav.1 (3 other biounits)

Crystal structure of PHF1 in complex with H3K36me3 substitution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: D.29, S.30, A.31, R.32 Ligands: UNX.14 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.29, A:S.30, A:A.31, A:R.32 Salt bridges: A:R.32

17 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 3 residues within 4Å: Chain A: R.4, S.53, P.54 Ligand excluded by PLIP UNX.3: 2 residues within 4Å: Chain A: W.15, T.16 Ligand excluded by PLIP UNX.4: 3 residues within 4Å: Chain A: Y.21, L.22 Chain B: K.7 Ligand excluded by PLIP UNX.5: 6 residues within 4Å: Chain A: L.12, L.20, D.51, I.52, S.53 Ligands: UNX.8 Ligand excluded by PLIP UNX.6: 2 residues within 4Å: Chain A: E.7, K.26 Ligand excluded by PLIP UNX.7: 2 residues within 4Å: Chain A: G.23, T.24 Ligand excluded by PLIP UNX.8: 4 residues within 4Å: Chain A: R.14, K.50 Ligands: UNX.5, UNX.9 Ligand excluded by PLIP UNX.9: 3 residues within 4Å: Chain A: R.14, D.51 Ligands: UNX.8 Ligand excluded by PLIP UNX.10: 2 residues within 4Å: Chain A: T.16, D.17 Ligand excluded by PLIP UNX.11: 3 residues within 4Å: Chain A: D.41, D.42, S.43 Ligand excluded by PLIP UNX.12: 4 residues within 4Å: Chain A: E.33, L.48, W.49, K.50 Ligand excluded by PLIP UNX.13: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.14: 4 residues within 4Å: Chain A: V.28, D.29, S.30 Ligands: SO4.1 Ligand excluded by PLIP UNX.15: 3 residues within 4Å: Chain A: E.7, K.27, V.28 Ligand excluded by PLIP UNX.16: 3 residues within 4Å: Chain A: Q.38, D.42 Chain B: A.1 Ligand excluded by PLIP UNX.17: 3 residues within 4Å: Chain A: L.19 Chain B: Y.11, R.12 Ligand excluded by PLIP UNX.18: 1 residues within 4Å: Chain B: V.9 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, C. et al., Structural basis for histone variant H3tK27me3 recognition by PHF1 and PHF19. Elife (2020)

Release Date

2020-08-26

Peptides

PHD finger protein 1: A
Histone H3.1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

PHD finger protein 1

Histone H3.1

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