SMTL ID : 6wct.1 (1 other biounit)

Crystal structure of a guanylate kinase from Stenotrophomonas maltophilia K279a bound to guanosine-5'-monophosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)

5GP.1: 18 residues within 4Å: Chain A: A.29, S.31, K.35, S.54, R.58, R.61, Y.70, E.89, A.91, V.93, K.98, G.99, T.100, E.118, I.119, D.120, G.123, E.172 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:S.31, A:K.35, A:S.54, A:Y.70, A:K.98, A:K.98, A:D.120, A:G.123, A:E.172 Water bridges: A:A.29, A:R.58 Salt bridges: A:R.58, A:R.61, A:E.89, A:K.98, A:D.120 5GP.3: 12 residues within 4Å: Chain B: S.54, Y.70, E.89, A.91, V.93, K.98, G.99, T.100, E.118, I.119, D.120, G.123 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:S.54, B:Y.70, B:K.98, B:K.98, B:T.100, B:D.120, B:G.123 Water bridges: B:A.29, B:R.58, B:R.61, B:R.61, B:E.172 Salt bridges: B:E.89, B:K.98, B:D.120

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 7 residues within 4Å: Chain A: G.32, A.33, G.34, K.35, S.36, R.150, R.154 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.32, A:G.34, A:K.35, A:S.36 Water bridges: A:S.31, A:S.31, A:A.33, A:A.33 Salt bridges: A:R.150, A:R.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edwards, T.E. et al., Crystal structure of a guanylate kinase from Stenotrophomonas maltophilia K279a bound to guanosine-5'-monophosphate. To Be Published

Release Date

2020-04-08

Peptides

Guanylate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Guanylate kinase

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