SMTL ID : 6wdq.1

IL23/IL23R/IL12Rb1 signaling complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 2 residues within 4Å: Chain A: K.101, N.105 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 3 residues within 4Å: Chain C: S.116, N.157 Ligands: NAG.6 No protein-ligand interaction detected (PLIP)

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: E.14, H.85, W.92, N.202 No protein-ligand interaction detected (PLIP) NAG.4: 3 residues within 4Å: Chain C: Q.30, N.58, T.61 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.58 NAG.5: 3 residues within 4Å: Chain C: N.239, T.241, N.243 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.243, C:N.243 NAG.6: 5 residues within 4Å: Chain C: S.116, N.118, N.157 Ligands: NAG-NAG.2, NAG-NAG.2 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.116, C:N.157 NAG.7: 6 residues within 4Å: Chain C: G.22, M.23, N.24, W.65, K.67, N.68 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Glassman, C.R. et al., Structural basis for IL-12 and IL-23 receptor sharing reveals a gateway for shaping actions on T versus NK cells. Cell (2021)

Release Date

2021-02-24

Peptides

Interleukin-12 subunit beta: A
Interleukin-23 subunit alpha: B
Interleukin-23 receptor: C
Interleukin-12 receptor subunit beta-1: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Interleukin-12 subunit beta

Interleukin-23 subunit alpha

Interleukin-23 receptor

Interleukin-12 receptor subunit beta-1

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