SMTL ID : 6wdz.3 (2 other biounits)

Porcine circovirus 2 Rep domain complexed with a single-stranded DNA 10-mer comprising the cleavage site

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: T.1 Chain B: W.16, E.83, K.84 Ligands: EDO.2 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.84 EDO.2: 1 residues within 4Å: Ligands: EDO.1 No protein-ligand interaction detected (PLIP)

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 6 residues within 4Å: Chain A: T.7, A.8 Chain B: E.47, H.56, Q.58, K.98 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.47, B:H.56, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tompkins, K.J. et al., Molecular underpinnings of ssDNA specificity by Rep HUH-endonucleases and implications for HUH-tag multiplexing and engineering. Nucleic Acids Res. (2021)

Release Date

2020-12-16

Peptides

ATP-dependent helicase Rep: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
G

ATP-dependent helicase Rep

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