SMTL ID : 6we0.1

Wheat dwarf virus Rep domain complexed with a single-stranded DNA 10-mer comprising the cleavage site

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)

MN.1: 6 residues within 4Å: Chain A: E.51, H.59, H.61, E.110 Chain B: T.7, A.8 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.59, A:H.61, A:E.110, A:E.110 MN.2: 1 residues within 4Å: Chain B: A.3 No protein-ligand interaction detected (PLIP) MN.3: 1 residues within 4Å: Chain B: A.5 No protein-ligand interaction detected (PLIP) MN.4: 1 residues within 4Å: Chain B: A.8 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tompkins, K.J. et al., Molecular underpinnings of ssDNA specificity by Rep HUH-endonucleases and implications for HUH-tag multiplexing and engineering. Nucleic Acids Res. (2021)

Release Date

2020-12-16

Peptides

Replication-associated protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Replication-associated protein