SMTL ID : 6we1.1 (1 other biounit)

Wheat dwarf virus Rep domain complexed with a single-stranded DNA 8-mer comprising the cleavage site

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.61 Å

Oligo State

monomer

Ligands

1 x DA- DA- DT- DA- DT- DT- DA- DC: DNA (5'-D(*AP*AP*TP*AP*TP*TP*AP*C)-3')(Non-covalent)

DA-DA-DT-DA-DT-DT-DA-DC.1: 26 residues within 4Å: Chain A: R.8, F.9, F.17, T.19, P.21, Q.22, S.57, H.59, H.61, P.75, N.76, H.91, P.92, N.93, I.94, Q.95, A.96, A.97, K.98, D.99, Q.102, V.103, F.106, E.110 Ligands: MN.2, MN.3 Protein-ligand interaction information (PLIP) not available

2 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)

MN.2: 6 residues within 4Å: Chain A: H.59, H.61, F.106, E.110 Ligands: DA-DA-DT-DA-DT-DT-DA-DC.1, DA-DA-DT-DA-DT-DT-DA-DC.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.59, A:H.61, A:E.110, A:E.110 MN.3: 2 residues within 4Å: Ligands: DA-DA-DT-DA-DT-DT-DA-DC.1, DA-DA-DT-DA-DT-DT-DA-DC.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tompkins, K.J. et al., Molecular underpinnings of ssDNA specificity by Rep HUH-endonucleases and implications for HUH-tag multiplexing and engineering. Nucleic Acids Res. (2021)

Release Date

2020-12-16

Peptides

Replication-associated protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Replication-associated protein

Related Entries With Identical Sequence