SMTL ID : 6weq.2 (1 other biounit)

DENV1 NS1 in complex with neutralizing 2B7 Fab fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-2-2-2-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: W.74, E.75, N.154 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.154 NAG.2: 3 residues within 4Å: Chain A: E.229, N.231, E.232 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.231 Hydrogen bonds: A:E.229, A:N.231 NAG.4: 3 residues within 4Å: Chain B: W.74, E.75, N.154 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:W.74 NAG.5: 1 residues within 4Å: Chain B: N.231 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: N.258, G.259 Chain B: G.259 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.259, B:G.259

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Biering, S.B. et al., Structural basis for antibody inhibition of flavivirus NS1-triggered endothelial dysfunction. Science (2021)

Release Date

2020-12-23

Peptides

Non-structural protein 1: AB
2B7 Fab fragment heavy chain: CE
2B7 Fab fragment light chain: DF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
I

E
K

D
J

F
L

Non-structural protein 1

2B7 Fab fragment heavy chain

2B7 Fab fragment light chain

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