SMTL ID : 6wex.1

Crystal Structure of Broadly Neutralizing Antibody 3I14-D93N Mutant Bound to the Influenza A H6 Hemagglutinin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.49 Å

Oligo State

hetero-3-3-3-3-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 9 residues within 4Å: Chain A: Q.17, D.19, N.25, R.315 Chain L: R.15, S.62, G.63, S.64, S.71 5 PLIP interactions: 4 interactions with chain L, 1 interactions with chain A Hydrogen bonds: L:R.15, L:S.64, L:S.71, L:S.71, A:Q.17 NAG.2: 9 residues within 4Å: Chain D: R.15, S.62, G.63, S.64, S.71 Chain E: Q.17, D.19, N.25, R.315 5 PLIP interactions: 1 interactions with chain E, 4 interactions with chain D Hydrogen bonds: E:Q.17, D:R.15, D:S.64, D:S.71, D:S.71 NAG.3: 9 residues within 4Å: Chain H: R.15, S.62, G.63, S.64, S.71 Chain I: Q.17, D.19, N.25, R.315 5 PLIP interactions: 4 interactions with chain H, 1 interactions with chain I Hydrogen bonds: H:R.15, H:S.64, H:S.71, H:S.71, I:Q.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harshbarger, W.D. et al., Unique structural solution from a V H 3-30 antibody targeting the hemagglutinin stem of influenza A viruses. Nat Commun (2021)

Release Date

2020-11-25

Peptides

Hemagglutinin: AEI
Hemagglutinin HA2 chain: BFJ
heavy chain: CGK
light chain: DHL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

E
E

I
E

B
F

F
F

J
F

C
H

G
H

K
H

D
L

H
L

L
L

Hemagglutinin

Hemagglutinin HA2 chain

heavy chain

light chain

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