SMTL ID : 6wf6.1

Streptomyces coelicolor methylmalonyl-CoA epimerase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.39 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.7, Q.60, H.84, E.134 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.7, A:H.84, A:E.134, H2O.1, H2O.4 CO.2: 4 residues within 4Å: Chain B: H.7, Q.60, H.84, E.134 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.7, B:H.84, B:E.134, H2O.9, H2O.11

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 2 residues within 4Å: Chain B: F.31, H.32 No protein-ligand interaction detected (PLIP) PEG.4: 8 residues within 4Å: Chain B: R.4, D.6, D.53, G.54, G.55, A.56, Y.58, S.138 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.4, B:R.4, B:D.53, B:A.56, B:S.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stunkard, L.M. et al., Substrate Enolate Intermediate and Mimic Captured in the Active Site of Streptomyces coelicolor Methylmalonyl-CoA Epimerase. Chembiochem (2022)

Release Date

2020-07-08

Peptides

Methylmalonyl-CoA epimerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Methylmalonyl-CoA epimerase

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