SMTL ID : 6wfv.1

The crystal structure of a collagen galactosylhydroxylysyl glucosyltransferase from human

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: D.93, D.96, H.234 Ligands: MG.2, UDP.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.93, A:D.96, A:D.96, A:H.234

2 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.2: 5 residues within 4Å: Chain A: D.93, D.96, H.234 Ligands: MN.1, UDP.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.93, A:D.96, A:D.96, A:H.234 MG.3: 2 residues within 4Å: Chain A: Q.173 Ligands: UDP.4 No protein-ligand interaction detected (PLIP)

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.4: 15 residues within 4Å: Chain A: V.25, A.26, T.27, W.56, V.61, K.70, D.93, S.94, Y.95, D.96, H.234, N.236 Ligands: MN.1, MG.2, MG.3 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:Y.95 Hydrogen bonds: A:V.25, A:T.27, A:T.27, A:S.94, A:S.94, A:Y.95, A:Y.95, A:D.96 Water bridges: A:T.27, A:T.27, A:K.70, A:K.70, A:K.70, A:K.70, A:D.172, A:D.172, A:Q.173 pi-Stacking: A:W.56

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.5: 3 residues within 4Å: Chain A: D.182, G.184, L.185 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.182, A:L.185 Water bridges: A:G.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, H.-F. et al., The crystal structure of a collagen galactosylhydroxylysyl glucosyltransferase from human. To Be Published

Release Date

2021-04-14

Peptides

Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3