SMTL ID : 6wgu.1

Mycobacterium tuberculosis pduO-type ATP:cobalamin adenosyltransferase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-trimer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.35, A.152, H.153, P.154, E.155, G.156 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.153, A:E.155, A:G.156 Salt bridges: A:H.153 SO4.2: 2 residues within 4Å: Chain A: D.59, T.60 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.60, A:T.60 Water bridges: A:Q.61 SO4.3: 8 residues within 4Å: Chain A: T.82, P.83, I.84, V.85, N.87, H.90, P.92, R.94 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.85, A:N.87 Water bridges: A:H.90 Salt bridges: A:H.90, A:R.94 SO4.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.5: 6 residues within 4Å: Chain B: R.35, A.152, H.153, P.154, E.155, G.156 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.153, B:E.155, B:G.156 Salt bridges: B:H.153 SO4.6: 2 residues within 4Å: Chain B: D.59, T.60 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.60, B:T.60 Water bridges: B:Q.61 SO4.7: 8 residues within 4Å: Chain B: T.82, P.83, I.84, V.85, N.87, H.90, P.92, R.94 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:V.85, B:N.87 Water bridges: B:H.90 Salt bridges: B:H.90, B:R.94 SO4.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.9: 6 residues within 4Å: Chain C: R.35, A.152, H.153, P.154, E.155, G.156 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:H.153, C:E.155, C:G.156 Salt bridges: C:H.153 SO4.10: 2 residues within 4Å: Chain C: D.59, T.60 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:T.60, C:T.60 Water bridges: C:Q.61 SO4.11: 8 residues within 4Å: Chain C: T.82, P.83, I.84, V.85, N.87, H.90, P.92, R.94 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:V.85, C:N.87 Water bridges: C:H.90 Salt bridges: C:H.90, C:R.94 SO4.12: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mascarenhas, R. et al., Mobile loop dynamics in adenosyltransferase control binding and reactivity of coenzyme B 12 . Proc.Natl.Acad.Sci.USA (2020)

Release Date

2021-01-20

Peptides

Corrinoid adenosyltransferase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Corrinoid adenosyltransferase

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