SMTL ID : 6wgy.1 (1 other biounit)

Crystal structure of a Putative citrate synthase 2 from Mycobacterium bovis in complex with citrate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

55 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 2 residues within 4Å: Chain A: R.35 Chain B: P.355 Ligand excluded by PLIP IOD.2: 3 residues within 4Å: Chain A: S.44, V.262 Ligands: IOD.20 Ligand excluded by PLIP IOD.3: 4 residues within 4Å: Chain A: S.144, T.145, V.146, R.149 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: A.68, R.149, R.153 Ligand excluded by PLIP IOD.5: 4 residues within 4Å: Chain A: R.81, A.322, T.325 Ligands: IOD.6 Ligand excluded by PLIP IOD.6: 6 residues within 4Å: Chain A: R.81, M.206, S.207, P.321, T.325 Ligands: IOD.5 Ligand excluded by PLIP IOD.7: 1 residues within 4Å: Chain A: L.101 Ligand excluded by PLIP IOD.8: 3 residues within 4Å: Chain A: D.105, A.106, R.341 Ligand excluded by PLIP IOD.9: 2 residues within 4Å: Chain A: Q.111, R.114 Ligand excluded by PLIP IOD.10: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.11: 2 residues within 4Å: Chain A: Q.132, W.154 Ligand excluded by PLIP IOD.12: 3 residues within 4Å: Chain A: P.25, K.27 Ligands: IOD.31 Ligand excluded by PLIP IOD.13: 1 residues within 4Å: Chain A: R.328 Ligand excluded by PLIP IOD.14: 2 residues within 4Å: Chain A: P.215, P.321 Ligand excluded by PLIP IOD.15: 5 residues within 4Å: Chain A: Y.169, G.213, A.214, P.215, A.306 Ligand excluded by PLIP IOD.16: 1 residues within 4Å: Chain A: A.216 Ligand excluded by PLIP IOD.17: 3 residues within 4Å: Chain A: R.217, L.219, P.220 Ligand excluded by PLIP IOD.18: 1 residues within 4Å: Chain A: M.221 Ligand excluded by PLIP IOD.19: 2 residues within 4Å: Chain A: R.232, S.287 Ligand excluded by PLIP IOD.20: 2 residues within 4Å: Chain A: R.269 Ligands: IOD.2 Ligand excluded by PLIP IOD.21: 1 residues within 4Å: Chain A: R.292 Ligand excluded by PLIP IOD.22: 3 residues within 4Å: Chain A: R.293, P.294, D.295 Ligand excluded by PLIP IOD.23: 3 residues within 4Å: Chain A: V.80, N.318, M.319 Ligand excluded by PLIP IOD.24: 4 residues within 4Å: Chain A: M.1, R.347, A.350 Chain B: M.178 Ligand excluded by PLIP IOD.25: 3 residues within 4Å: Chain A: G.365 Chain B: N.60, G.62 Ligand excluded by PLIP IOD.26: 2 residues within 4Å: Chain A: E.69, W.95 Ligand excluded by PLIP IOD.27: 3 residues within 4Å: Chain A: P.72, Q.125, A.134 Ligand excluded by PLIP IOD.28: 2 residues within 4Å: Chain A: H.162, F.312 Ligand excluded by PLIP IOD.29: 1 residues within 4Å: Chain A: I.298 Ligand excluded by PLIP IOD.30: 2 residues within 4Å: Chain A: E.256, R.264 Ligand excluded by PLIP IOD.31: 5 residues within 4Å: Chain A: M.178 Chain B: M.1, R.347, A.350 Ligands: IOD.12 Ligand excluded by PLIP IOD.32: 1 residues within 4Å: Chain B: P.70 Ligand excluded by PLIP IOD.33: 2 residues within 4Å: Chain A: P.355 Chain B: R.35 Ligand excluded by PLIP IOD.34: 3 residues within 4Å: Chain B: E.40, S.44 Ligands: IOD.46 Ligand excluded by PLIP IOD.35: 4 residues within 4Å: Chain B: S.144, T.145, V.146, R.149 Ligand excluded by PLIP IOD.36: 3 residues within 4Å: Chain B: A.68, R.149, R.153 Ligand excluded by PLIP IOD.37: 3 residues within 4Å: Chain B: R.81, A.322, T.325 Ligand excluded by PLIP IOD.38: 1 residues within 4Å: Chain B: L.101 Ligand excluded by PLIP IOD.39: 3 residues within 4Å: Chain B: D.105, A.106, R.341 Ligand excluded by PLIP IOD.40: 3 residues within 4Å: Chain B: Q.110, Q.111, R.114 Ligand excluded by PLIP IOD.41: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.42: 2 residues within 4Å: Chain B: Q.132, W.154 Ligand excluded by PLIP IOD.43: 3 residues within 4Å: Chain B: A.216, G.247, N.301 Ligand excluded by PLIP IOD.44: 4 residues within 4Å: Chain B: A.216, R.217, V.218, M.320 Ligand excluded by PLIP IOD.45: 1 residues within 4Å: Chain B: M.221 Ligand excluded by PLIP IOD.46: 2 residues within 4Å: Chain B: R.269 Ligands: IOD.34 Ligand excluded by PLIP IOD.47: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.48: 3 residues within 4Å: Chain B: R.293, P.294, D.295 Ligand excluded by PLIP IOD.49: 3 residues within 4Å: Chain B: V.80, N.318, M.319 Ligand excluded by PLIP IOD.50: 2 residues within 4Å: Chain B: E.69, W.95 Ligand excluded by PLIP IOD.51: 1 residues within 4Å: Chain B: K.236 Ligand excluded by PLIP IOD.52: 3 residues within 4Å: Chain B: R.161, H.162, F.312 Ligand excluded by PLIP IOD.53: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.54: 3 residues within 4Å: Chain A: G.59 Chain B: R.358, D.364 Ligand excluded by PLIP IOD.55: 1 residues within 4Å: Chain B: N.7 Ligand excluded by PLIP

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.56: 11 residues within 4Å: Chain A: R.347 Chain B: H.176, N.179, H.211, G.212, G.213, R.259, V.302, E.303, F.324, R.328 15 PLIP interactions: 13 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:N.179, B:H.211 Water bridges: B:K.27, B:H.211, B:H.211, B:G.213, B:V.302, A:R.347 Salt bridges: B:H.176, B:H.176, B:H.211, B:R.259, B:R.259, B:R.328, A:R.347

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Crystal structure of a Putative citrate synthase 2 from Mycobacterium bovis in complex with citrate. to be published

Release Date

2020-04-22

Peptides

Putative citrate synthase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Putative citrate synthase 2

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