- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 8 x CA: CALCIUM ION(Non-covalent)
- 4 x PWE: (2R)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1S,2S,3S,4S,5S,6R)-2,3,4,6-tetrahydroxy-5-(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propan-2-yl hexadecanoate(Non-covalent)
PWE.3: 20 residues within 4Å:- Chain A: S.297, F.298, W.299, N.300, F.302, P.346, F.347, S.350, L.354, E.357, L.366, L.369, K.370, L.476, Q.479, R.483
- Chain D: F.390, I.437, G.441, I.445
17 PLIP interactions:2 interactions with chain D, 15 interactions with chain A- Hydrophobic interactions: D:F.390, D:I.445, A:F.298, A:F.298, A:F.302, A:F.302, A:F.347, A:F.347, A:L.366
- Hydrogen bonds: A:S.297, A:F.298, A:W.299, A:N.300, A:E.357, A:Q.479, A:R.483
- Salt bridges: A:R.483
PWE.6: 20 residues within 4Å:- Chain A: F.390, I.437, G.441, I.445
- Chain B: S.297, F.298, W.299, N.300, F.302, P.346, F.347, S.350, L.354, E.357, L.366, L.369, K.370, L.476, Q.479, R.483
17 PLIP interactions:15 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:F.298, B:F.298, B:F.302, B:F.302, B:F.347, B:F.347, B:L.366, A:F.390, A:I.445
- Hydrogen bonds: B:S.297, B:F.298, B:W.299, B:N.300, B:E.357, B:Q.479, B:R.483
- Salt bridges: B:R.483
PWE.9: 20 residues within 4Å:- Chain B: F.390, I.437, G.441, I.445
- Chain C: S.297, F.298, W.299, N.300, F.302, P.346, F.347, S.350, L.354, E.357, L.366, L.369, K.370, L.476, Q.479, R.483
17 PLIP interactions:15 interactions with chain C, 2 interactions with chain B- Hydrophobic interactions: C:F.298, C:F.298, C:F.302, C:F.302, C:F.347, C:F.347, C:L.366, B:F.390, B:I.445
- Hydrogen bonds: C:S.297, C:F.298, C:W.299, C:N.300, C:E.357, C:Q.479, C:R.483
- Salt bridges: C:R.483
PWE.12: 20 residues within 4Å:- Chain C: F.390, I.437, G.441, I.445
- Chain D: S.297, F.298, W.299, N.300, F.302, P.346, F.347, S.350, L.354, E.357, L.366, L.369, K.370, L.476, Q.479, R.483
17 PLIP interactions:15 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:F.298, D:F.298, D:F.302, D:F.302, D:F.347, D:F.347, D:L.366, C:F.390, C:I.445
- Hydrogen bonds: D:S.297, D:F.298, D:W.299, D:N.300, D:E.357, D:Q.479, D:R.483
- Salt bridges: D:R.483
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ahmed, T. et al., Structure of the ancient TRPY1 channel from Saccharomyces cerevisiae reveals mechanisms of modulation by lipids and calcium. Structure (2022)
- Release Date
- 2021-04-21
- Peptides
- Calcium channel YVC1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 8 x CA: CALCIUM ION(Non-covalent)
- 4 x PWE: (2R)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1S,2S,3S,4S,5S,6R)-2,3,4,6-tetrahydroxy-5-(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propan-2-yl hexadecanoate(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ahmed, T. et al., Structure of the ancient TRPY1 channel from Saccharomyces cerevisiae reveals mechanisms of modulation by lipids and calcium. Structure (2022)
- Release Date
- 2021-04-21
- Peptides
- Calcium channel YVC1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D