SMTL ID : 6whp.1

Structure of Choline kinase from Cryptococcus neoformans var. grubii serotype A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: S.16, V.17, D.18, E.21, V.26, F.27, K.30 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.18, A:D.18, A:K.30 EDO.2: 5 residues within 4Å: Chain A: E.156, F.157, F.158, L.275, I.294 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.158, A:F.158 EDO.3: 3 residues within 4Å: Chain A: K.363, R.364, K.365 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.364, A:K.365 EDO.7: 7 residues within 4Å: Chain B: S.16, V.17, D.18, E.21, V.26, F.27, K.30 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.18, B:D.18, B:E.21, B:K.30 EDO.8: 5 residues within 4Å: Chain B: E.156, F.157, F.158, L.275, I.294 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:F.158, B:F.158 EDO.9: 3 residues within 4Å: Chain B: K.363, R.364, K.365 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.364, B:K.365

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain B: L.101, P.103, Y.106 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain A: R.42, R.144 Chain B: R.42, R.144 Ligands: CL.11 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: T.285 Chain B: S.93 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain A: L.101, P.103, Y.106 Ligand excluded by PLIP CL.11: 5 residues within 4Å: Chain A: R.42, R.144 Chain B: R.42, R.144 Ligands: CL.5 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain A: S.93 Chain B: T.285 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Structure of Choline kinase from Cryptococcus neoformans var. grubii serotype A. to be published

Release Date

2020-04-22

Peptides

Choline kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Choline kinase