SMTL ID : 6wi7.1

RING1B-BMI1 fusion in closed conformation

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.125, C.128, C.146, C.149 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.125, A:C.128, A:C.146, A:C.149 ZN.2: 4 residues within 4Å: Chain A: C.141, H.143, C.160, C.163 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.141, A:H.143, A:C.160, A:C.163 ZN.3: 4 residues within 4Å: Chain A: C.58, H.60, C.78, C.81 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.58, A:H.60, A:C.78, A:C.81 ZN.4: 4 residues within 4Å: Chain A: C.42, C.45, C.63, C.66 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.42, A:C.45, A:C.63, A:C.66

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.5: 3 residues within 4Å: Chain A: Y.187, F.194, K.195 4 PLIP interactions: 4 interactions with chain A Water bridges: A:G.192, A:G.192, A:K.195 pi-Cation interactions: A:F.194

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 8 residues within 4Å: Chain A: Q.20, E.21, I.23, V.190, P.191, G.192, L.193, N.196 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.20, A:P.191 Water bridges: A:E.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shukla, S. et al., Small-molecule inhibitors targeting Polycomb repressive complex 1 RING domain. Nat.Chem.Biol. (2021)

Release Date

2021-04-14

Peptides

E3 ubiquitin-protein ligase RING2, Polycomb complex protein BMI-1 chimera: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase RING2, Polycomb complex protein BMI-1 chimera

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