SMTL ID : 6wim.1

CdiB from Escherichia coli

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

10 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 2 residues within 4Å: Chain A: F.511 Ligands: PEG.2 No protein-ligand interaction detected (PLIP) PEG.2: 4 residues within 4Å: Chain A: T.502, G.509, S.510 Ligands: PEG.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.509 PEG.3: 1 residues within 4Å: Chain A: W.288 No protein-ligand interaction detected (PLIP) PEG.4: 2 residues within 4Å: Chain A: H.299, H.323 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.323 PEG.5: 3 residues within 4Å: Chain A: R.144, L.232, L.234 No protein-ligand interaction detected (PLIP) PEG.6: 1 residues within 4Å: Chain A: Y.274 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.274, A:Y.274 PEG.7: 6 residues within 4Å: Chain A: L.222, N.223, G.224, G.242, G.243, N.256 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.223 PEG.8: 2 residues within 4Å: Chain A: L.303, H.305 No protein-ligand interaction detected (PLIP) PEG.9: 3 residues within 4Å: Chain A: F.345, M.370, W.372 No protein-ligand interaction detected (PLIP) PEG.10: 2 residues within 4Å: Chain A: F.366, W.393 No protein-ligand interaction detected (PLIP)

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.11: 2 residues within 4Å: Chain A: Y.272 Ligands: EDO.12 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.272 EDO.12: 2 residues within 4Å: Chain A: Y.274 Ligands: EDO.11 No protein-ligand interaction detected (PLIP) EDO.13: 3 residues within 4Å: Chain A: W.276, D.295, Q.297 No protein-ligand interaction detected (PLIP) EDO.14: 1 residues within 4Å: Chain A: Y.265 No protein-ligand interaction detected (PLIP) EDO.15: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guerin, J. et al., Structural insight into toxin secretion by contact dependent growth inhibition transporters. Elife (2020)

Release Date

2020-11-04

Peptides

Outer membrane transporter CdiB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Outer membrane transporter CdiB