SMTL ID : 6wiy.1

Crystal structure of Fab 54-1G05

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

hetero-1-1-mer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 12 residues within 4Å: Chain A: F.180, P.181, V.183, S.191, L.192, S.193 Chain B: Q.163, E.164, S.165, S.179, S.180, T.181 7 PLIP interactions: 3 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:F.180, A:S.191, A:S.193, B:S.165, B:S.179, B:S.179, B:T.181 GOL.2: 6 residues within 4Å: Chain A: D.27, S.31, S.33, A.34, R.101, S.103 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.27, A:S.33, A:S.33 Water bridges: A:R.101, A:R.101, A:S.103 GOL.3: 5 residues within 4Å: Chain A: R.52, Y.54, R.56, F.110 Chain B: R.97 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.52, A:R.52, A:R.56 Water bridges: A:F.110, A:F.110, A:F.110, B:R.97 GOL.4: 3 residues within 4Å: Chain A: S.30, Y.55, T.77 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.30, A:S.30 GOL.5: 8 residues within 4Å: Chain B: Q.38, K.40, T.46, L.48, V.59, P.60, R.62, F.63 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.38, B:Q.38, B:K.40, B:R.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, N.C. et al., Convergent Evolution in Breadth of Two VH6-1-Encoded Influenza Antibody Clonotypes from a Single Donor. Cell Host Microbe (2020)

Release Date

2020-07-01

Peptides

Fab 54-1G05 heavy chain: A
Fab 54-1G05 light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

Fab 54-1G05 heavy chain

Fab 54-1G05 light chain