SMTL ID : 6wiz.1

Crystal structure of Fab 54-1G05 bound to H1 influenza hemagglutinin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.20 Å

Oligo State

hetero-3-3-3-3-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 6 residues within 4Å: Chain A: N.65, E.67, E.87, N.88, S.137, R.221 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:E.67 Hydrogen bonds: A:E.87, A:N.88, A:R.221, A:R.221 NAG.2: 6 residues within 4Å: Chain E: N.65, E.67, E.87, N.88, S.137, R.221 5 PLIP interactions: 5 interactions with chain E Hydrophobic interactions: E:E.67 Hydrogen bonds: E:E.87, E:N.88, E:R.221, E:R.221 NAG.3: 6 residues within 4Å: Chain I: N.65, E.67, E.87, N.88, S.137, R.221 5 PLIP interactions: 5 interactions with chain I Hydrophobic interactions: I:E.67 Hydrogen bonds: I:E.87, I:N.88, I:R.221, I:R.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, N.C. et al., Convergent Evolution in Breadth of Two VH6-1-Encoded Influenza Antibody Clonotypes from a Single Donor. Cell Host Microbe (2020)

Release Date

2020-07-01

Peptides

Hemagglutinin HA1: AEI
Hemagglutinin HA2: BFJ
Fab 54-1G05 heavy chain: CGK
Fab 54-1G05 light chain: DHL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

B
B

F
B

J
B

C
H

G
H

K
H

D
L

H
L

L
L

Hemagglutinin HA1

Hemagglutinin HA2

Fab 54-1G05 heavy chain

Fab 54-1G05 light chain

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