SMTL ID : 6wk2.3 (2 other biounits)

SETD3 mutant (N255V) in Complex with an Actin Peptide with His73 Replaced with Methionine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 17 residues within 4Å: Chain A: M.8 Chain B: R.75, E.103, E.104, F.106, P.180, T.253, R.254, D.275, M.276, C.277, N.278, H.279, Y.313, S.325, F.327, F.329 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:F.106, B:N.278, B:N.278, B:H.279, B:H.279 Water bridges: B:R.75, B:E.104, B:E.104, B:D.184, B:T.253, B:S.325, B:G.326 Salt bridges: B:R.75, B:R.254 pi-Stacking: B:F.327, B:F.327

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain B: L.341, G.342, F.388, R.433 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.342, B:R.433, B:R.433

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain B: Q.198, S.199, I.203 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dai, S. et al., Characterization of SETD3 methyltransferase-mediated protein methionine methylation. J.Biol.Chem. (2020)

Release Date

2020-06-17

Peptides

Actin, cytoplasmic 2: A
Actin-histidine N-methyltransferase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Actin, cytoplasmic 2

Actin-histidine N-methyltransferase

Related Entries With Identical Sequence