SMTL ID : 6wkw.1

EM structure of CtBP2 with a minimal dehydrogenase domain of CtBP2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Covalent)(Non-covalent)

NAD.1: 23 residues within 4Å: Chain A: S.74, T.102, I.154, G.155, G.157, R.158, T.159, Y.177, D.178, P.179, Y.180, L.181, H.210, C.211, N.212, N.217, A.238, A.239, R.240, D.264, H.289, A.291, W.292 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:T.102, A:W.292 Hydrogen bonds: A:S.74, A:F.156, A:R.158, A:R.158, A:T.159, A:T.159, A:C.211, A:A.238, A:R.240 Salt bridges: A:R.158 pi-Stacking: A:Y.180 NAD.2: 23 residues within 4Å: Chain B: S.74, G.75, T.102, I.154, G.157, R.158, T.159, Y.177, D.178, Y.180, L.181, H.210, C.211, N.212, N.214, N.217, A.238, A.239, R.240, D.264, H.289, A.291, W.292 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:T.102, B:W.292 Hydrogen bonds: B:S.74, B:R.158, B:R.158, B:T.159, B:D.178, B:N.212, B:N.214, B:N.217, B:R.240, B:D.264 Salt bridges: B:R.158 NAD.3: 24 residues within 4Å: Chain C: S.74, G.75, T.102, I.154, G.155, G.157, R.158, T.159, Y.177, D.178, P.179, Y.180, H.210, C.211, N.212, H.216, N.217, A.238, A.239, R.240, D.264, H.289, A.291, W.292 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:T.102, C:W.292 Hydrogen bonds: C:S.74, C:R.158, C:R.158, C:T.159, C:C.211, C:N.212, C:H.216, C:N.217, C:R.240, C:R.240, C:D.264 Salt bridges: C:R.158 NAD.4: 24 residues within 4Å: Chain D: S.74, G.75, T.102, I.154, G.155, G.157, R.158, T.159, Y.177, D.178, P.179, Y.180, H.210, C.211, N.212, N.214, N.217, A.238, A.239, R.240, D.264, H.289, A.291, W.292 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:T.102, D:W.292 Hydrogen bonds: D:S.74, D:R.158, D:R.158, D:T.159, D:T.159, D:N.214, D:N.217, D:A.238 Salt bridges: D:R.158 pi-Stacking: D:Y.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jecrois, A.M. et al., Cryo-EM structure of CtBP2 confirms tetrameric architecture. Structure (2021)

Release Date

2020-12-02

Peptides

C-terminal-binding protein 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
C

C
B

D
A

C-terminal-binding protein 2