SMTL ID : 6wlz.1

The V1 region of human V-ATPase in state 1 (focused refinement)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-3-3-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain C: A.251, G.253, C.254, G.255, K.256, T.257, V.258, E.283, F.445, Q.522, N.523, G.524, Y.525 Chain F: R.400, K.403 13 PLIP interactions: 11 interactions with chain C, 2 interactions with chain F Hydrogen bonds: C:A.251, C:G.253, C:C.254, C:G.255, C:K.256, C:T.257, C:V.258, C:Q.522, C:G.524 Salt bridges: C:K.256, F:R.400, F:R.400 pi-Stacking: C:F.445

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, L. et al., Structures of a Complete Human V-ATPase Reveal Mechanisms of Its Assembly. Mol.Cell (2020)

Release Date

2020-11-11

Peptides

V-type proton ATPase catalytic subunit A: ABC
V-type proton ATPase subunit B, brain isoform: DEF
SidK: GHI
V-type proton ATPase subunit E 1: JMO
V-type proton ATPase subunit G 1: KNP
V-type proton ATPase subunit D: L
V-type proton ATPase subunit F: Q

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
X

H
Y

I
Z

J
J

M
I

O
H

K
M

N
L

P
K

L
G

Q
N

V-type proton ATPase catalytic subunit A

V-type proton ATPase subunit B, brain isoform

SidK

V-type proton ATPase subunit E 1

V-type proton ATPase subunit G 1

V-type proton ATPase subunit D

V-type proton ATPase subunit F

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