SMTL ID : 6wma.1

Crystal structure of a soluble variant of full-length human APOBEC3G (pH 7.6)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x DC- DC: DNA (5'-D(P*CP*C)-3')(Non-covalent)

DC-DC.1: 10 residues within 4Å: Chain A: P.193, W.194, V.195, R.196, G.197, R.198, H.199, W.268, Y.298, D.299 Protein-ligand interaction information (PLIP) not available

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.240, C.271, C.274 Ligands: CL.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.240, A:C.271, A:C.274

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: H.240, C.271 Ligands: ZN.2 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 2 residues within 4Å: Chain A: Y.323, D.348 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.323, A:D.348

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maiti, A. et al., Crystal Structure of a Soluble APOBEC3G Variant Suggests ssDNA to Bind in a Channel that Extends between the Two Domains. J.Mol.Biol. (2020)

Release Date

2020-12-23

Peptides

APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC PEPTIDE- LIKE 3G: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

APOLIPOPROTEIN B MRNA EDITING ENZYME, CATALYTIC PEPTIDE- LIKE 3G

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