SMTL ID : 6wmi.1 (1 other biounit)

ZNF410 zinc fingers 1-5 with 17 mer blunt DNA Oligonucleotide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: Y.27, Y.50, V.51, R.54 Chain B: A.11, A.12 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.50 Water bridges: A:R.54

5 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.70, C.75, H.88, H.92 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.70, A:C.75, A:H.88, A:H.92 ZN.3: 4 residues within 4Å: Chain A: C.10, C.15, H.28, H.32 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.10, A:C.15, A:H.28, A:H.32 ZN.4: 4 residues within 4Å: Chain A: C.100, C.105, H.118, H.122 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.100, A:C.105, A:H.118, A:H.122 ZN.5: 4 residues within 4Å: Chain A: C.40, C.45, H.58, H.62 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.40, A:C.45, A:H.58, A:H.62 ZN.6: 4 residues within 4Å: Chain A: C.130, C.133, H.146, H.150 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.130, A:C.133, A:H.146, A:H.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lan, X. et al., ZNF410 Uniquely Activates the NuRD Component CHD4 to Silence Fetal Hemoglobin Expression. Mol.Cell (2021)

Release Date

2020-12-09

Peptides

Zinc finger protein 410: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Zinc finger protein 410

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