SMTL ID : 6wmq.1

Crystal Structure of Human REV-ERBbeta Ligand Binding Domain Co-Bound to Heme and NCoR ID1 Peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

hetero-2-2-mer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 26 residues within 4Å: Chain A: H.1, L.2, V.3, C.4, P.5, M.6, W.22, F.25, F.29, V.33, F.63, L.66, M.67, F.70, F.74, A.99, G.100, D.101, L.102, L.103, M.106, H.188, E.191, L.192, F.195 Chain C: I.12 25 PLIP interactions: 24 interactions with chain A, 1 interactions with chain C, Hydrophobic interactions: A:L.2, A:V.3, A:P.5, A:W.22, A:F.25, A:F.29, A:F.29, A:V.33, A:F.63, A:F.63, A:L.66, A:F.70, A:F.74, A:L.102, A:L.103, A:L.192, A:F.195, C:I.12 Hydrogen bonds: A:V.3, A:G.100, A:L.102, A:L.103, A:E.191 Metal complexes: A:C.4, A:H.188 HEM.2: 23 residues within 4Å: Chain B: H.1, L.2, V.3, C.4, P.5, M.6, W.22, F.25, F.29, V.33, F.63, L.66, M.67, F.70, F.74, A.99, G.100, L.102, L.103, M.106, H.188, E.191, F.195 24 PLIP interactions: 24 interactions with chain B, Hydrophobic interactions: B:L.2, B:V.3, B:P.5, B:W.22, B:F.29, B:F.29, B:V.33, B:F.63, B:F.63, B:L.66, B:F.70, B:F.74, B:F.74, B:L.102, B:L.103, B:F.195 Hydrogen bonds: B:V.3, B:G.100, B:G.100, B:L.102, B:L.103 Water bridges: B:D.101 Metal complexes: B:C.4, B:H.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mosure, S.A. et al., Structural basis for heme-dependent NCoR binding to the transcriptional repressor REV-ERB beta. Sci Adv (2021)

Release Date

2021-02-17

Peptides

Nuclear receptor Rev-ErbA beta variant 1: AB
Nuclear receptor corepressor 1: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
E

D
F

Nuclear receptor Rev-ErbA beta variant 1

Nuclear receptor corepressor 1

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