SMTL ID : 6wnn.1

Bacillus subtilis BioA in complex with amino donor L-Lys

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

homo-dimer

Ligands

1 x LLP: (2S)-2-amino-6-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]hexanoic acid(Non-covalent)

LLP.1: 16 residues within 4Å: Chain A: F.17, V.53, W.54, S.112, G.113, A.114, Y.146, H.147, D.251, V.253, A.254, K.280, R.410 Chain B: L.82, H.316, S.317 11 PLIP interactions: 7 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:Y.146, B:L.82 Hydrogen bonds: A:S.112, A:G.113, A:A.114, A:Y.146, A:K.280, B:S.317, B:S.317 Salt bridges: A:R.410, B:H.316

1 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PMP.2: 11 residues within 4Å: Chain A: H.316, S.317 Chain B: W.54, S.112, G.113, A.114, Y.146, E.217, D.251, A.254, K.280 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:E.217 Hydrogen bonds: B:G.113, B:A.114, B:K.280, B:K.280, A:S.317, A:S.317 pi-Stacking: B:Y.146 Salt bridges: A:H.316

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cramer, J. et al., Substrate divergence in 7,8-diaminopelargonic acid synthesis: mutagenesis and computational studies of L-lysine dependent Bacillus subtilis BioA. To Be Published

Release Date

2021-04-28

Peptides

Adenosylmethionine-8-amino-7-oxononanoate aminotransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Adenosylmethionine-8-amino-7-oxononanoate aminotransferase