SMTL ID : 6wo3.1

Structure of Hepatitis C Virus Envelope Glycoprotein E2 core from genotype 6a bound to broadly neutralizing antibody U1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.123, T.125, F.127, K.129 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: N.19 Chain B: L.101, K.102, W.104 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tzarum, N. et al., An alternate conformation of HCV E2 neutralizing face as an additional vaccine target. Sci Adv (2020)

Release Date

2020-08-19

Peptides

Envelope glycoprotein E2: A
Fab U1 heavy chain: B
Fab U1 light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
H

C
L

Envelope glycoprotein E2

Fab U1 heavy chain

Fab U1 light chain

Related Entries With Identical Sequence