SMTL ID : 6wo4.1

Structure of Hepatitis C Virus Envelope Glycoprotein E2 core from genotype 6a bound to broadly neutralizing antibody HC11

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain B: N.19, S.21 Chain C: S.50, G.113 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 5 residues within 4Å: Chain B: N.123, S.124, T.125, F.127, K.129 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 5 residues within 4Å: Chain A: T.57, G.106 Chain B: N.12, Y.94, W.96 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.106, B:Y.94 NAG.4: 4 residues within 4Å: Chain B: S.38, C.41, C.164, N.167 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.38, B:S.38, B:N.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tzarum, N. et al., An alternate conformation of HCV E2 neutralizing face as an additional vaccine target. Sci Adv (2020)

Release Date

2020-08-19

Peptides

Fab HC11 heavy chain: A
Envelope glycoprotein E2: B
Fab HC11 light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
E

C
L

Fab HC11 heavy chain

Envelope glycoprotein E2

Fab HC11 light chain

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