SMTL ID : 6woj.4 (3 other biounits)

Structure of the SARS-CoV-2 macrodomain (NSP3) in complex with ADP-ribose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)

APR.1: 23 residues within 4Å: Chain A: A.22, D.23, I.24, A.39, A.40, N.41, K.45, H.46, G.47, G.48, G.49, V.50, A.51, P.126, L.127, S.129, A.130, G.131, I.132, F.133, A.155, F.157, L.161 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:D.23, A:D.23, A:I.24, A:N.41, A:G.47, A:G.49, A:V.50, A:S.129, A:S.129, A:A.130, A:G.131, A:I.132, A:F.133, A:F.157 Water bridges: A:H.46, A:A.51, A:A.51, A:L.127 pi-Stacking: A:F.157, A:F.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alhammad, Y.M.O. et al., The SARS-CoV-2 Conserved Macrodomain Is a Mono-ADP-Ribosylhydrolase. J.Virol. (2021)

Release Date

2020-05-06

Peptides

Non-structural protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Non-structural protein 3

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