SMTL ID : 6woq.2 (1 other biounit)

Structure of Hepatitis C Virus Envelope Glycoprotein E2 core from genotype 1a bound to neutralizing antibody HC1AM and non neutralizing antibody E1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.67 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain C: N.101, D.102, T.103 Chain E: R.27, T.28, S.30 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:R.27 NAG-NAG.2: 4 residues within 4Å: Chain C: S.70, N.125, T.127, F.129 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:F.129

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-functional Binders)

NAG.3: 6 residues within 4Å: Chain C: H.12, N.14 Chain D: Q.62, H.65 Chain E: S.95 Ligands: NAG.4 4 PLIP interactions: 2 interactions with chain D, 1 interactions with chain E, 1 interactions with chain C Hydrogen bonds: D:Q.62, D:Q.62, E:S.95, C:N.14 NAG.4: 1 residues within 4Å: Ligands: NAG.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tzarum, N. et al., An alternate conformation of HCV E2 neutralizing face as an additional vaccine target. Sci Adv (2020)

Release Date

2020-08-19

Peptides

Fab E1 heavy chain: A
Fab E1 light chain: B
Envelope glycoprotein E2: C
Fab HC1AM heavy chain: D
Fab HC1AM light chain: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
F

D
G

E
H

Fab E1 heavy chain

Fab E1 light chain

Envelope glycoprotein E2

Fab HC1AM heavy chain

Fab HC1AM light chain

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