SMTL ID : 6wph.1

Structure of HIV-1 Reverse Transcriptase (RT) in complex with dsDNA and (-)-FTC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.72 Å

Oligo State

hetero-1-1-mer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.443, G.444, E.478, D.498 Chain D: C.23 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.443, A:E.478, A:D.498, A:D.498 MG.2: 2 residues within 4Å: Chain B: P.284, I.286 No protein-ligand interaction detected (PLIP)

1 x 43X: [(2R,5S)-5-(4-amino-5-fluoro-2-oxopyrimidin-1(2H)-yl)-1,3-oxathiolan-2-yl]methyl dihydrogen phosphate(Non-covalent)

43X.3: 6 residues within 4Å: Chain A: R.72, D.110, Q.151, D.185 Chain C: G.21 Chain D: G.5 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:R.72

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain C: G.15, G.16, C.17 Chain D: G.10, C.11 No protein-ligand interaction detected (PLIP) SO4.6: 3 residues within 4Å: Chain C: C.19 Chain D: G.7, G.8 No protein-ligand interaction detected (PLIP)

1 x DGP: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE(Non-functional Binders)

DGP.5: 1 residues within 4Å: Chain D: T.24 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bertoletti, N. et al., Post-Catalytic Complexes with Emtricitabine or Stavudine and HIV-1 Reverse Transcriptase Reveal New Mechanistic Insights for Nucleotide Incorporation and Drug Resistance. Molecules (2020)

Release Date

2020-11-04

Peptides

Reverse transcriptase/ribonuclease H: A
p51 RT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Reverse transcriptase/ribonuclease H

p51 RT

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