SMTL ID : 6wpu.1

Structure of S-allyl-L-cysteine S-oxygenase from Allium sativum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 26 residues within 4Å: Chain A: I.28, G.29, G.31, A.32, A.33, F.51, E.52, R.53, G.59, T.60, W.61, H.82, L.89, T.91, N.92, M.98, K.144, E.145, V.146, C.179, N.180, G.181, Y.183, F.302, P.343, F.344 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:Y.183 Hydrogen bonds: A:A.30, A:G.31, A:A.33, A:R.53, A:R.53, A:T.60, A:T.60, A:W.61, A:N.92, A:L.93, A:V.146, A:V.146, A:G.181 Water bridges: A:A.32, A:A.32, A:G.34, A:G.59 Salt bridges: A:H.82 pi-Stacking: A:W.61, A:W.61

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.42, R.43, F.134 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.42, A:R.43 SO4.3: 4 residues within 4Å: Chain A: R.90, R.232, R.437, D.438 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.90, A:R.232, A:R.437 SO4.4: 5 residues within 4Å: Chain A: L.303, N.304, T.305, N.306, G.307 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.304, A:T.305, A:N.306, A:G.307 Water bridges: A:L.303, A:T.305 SO4.5: 2 residues within 4Å: Chain A: T.366, K.367 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.367 Water bridges: A:T.366 Salt bridges: A:K.367 SO4.6: 3 residues within 4Å: Chain A: R.53, G.54, S.55 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.55 Salt bridges: A:R.53 SO4.7: 3 residues within 4Å: Chain A: K.108, T.109, N.110 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.109, A:T.109, A:N.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Valentino, H. et al., Structure and function of a flavin-dependent S-monooxygenase from garlic (Allium sativum). J.Biol.Chem. (2020)

Release Date

2020-06-17

Peptides

Flavin-containing monooxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Flavin-containing monooxygenase