SMTL ID : 6wqd.1

The 1.95 A Crystal Structure of the Co-factor Complex of NSP7 and the C-terminal Domain of NSP8 from SARS-CoV-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-2-2-mer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: K.46, D.47, E.50 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.47 EDO.2: 2 residues within 4Å: Chain B: N.29, N.32 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.29, B:N.32 Water bridges: B:N.29 EDO.3: 3 residues within 4Å: Chain A: E.53 Chain B: A.74, R.114 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.114, B:R.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wilamowski, M. et al., Transient and stabilized complexes of Nsp7, Nsp8, and Nsp12 in SARS-CoV-2 replication. Biophys.J. (2021)

Release Date

2020-05-06

Peptides

Non-structural protein 7: AC
Non-structural protein 8: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Non-structural protein 7

Non-structural protein 8

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