SMTL ID : 6wqz.1

Structure of human ATG9A, the only transmembrane protein of the core autophagy machinery

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

6 x LMN: Lauryl Maltose Neopentyl Glycol(Non-covalent)

LMN.1: 15 residues within 4Å: Chain A: I.135, F.142, R.245, G.246, Y.249, N.250, L.253, A.296, N.297, L.300, L.303, I.304, W.307, Y.311 Ligands: LMN.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.135, A:F.142, A:Y.249, A:Y.249, A:A.296 Hydrogen bonds: A:R.245, A:R.245, A:Q.308, A:Y.311, A:Y.311, A:Y.316 LMN.2: 7 residues within 4Å: Chain A: L.45, H.145, F.215, Y.249, W.257, L.300 Ligands: LMN.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.300 Hydrogen bonds: A:Y.249 Salt bridges: A:H.145, A:K.149, A:K.149 LMN.3: 15 residues within 4Å: Chain C: I.135, F.142, R.245, G.246, Y.249, N.250, L.253, A.296, N.297, L.300, L.303, I.304, W.307, Y.311 Ligands: LMN.4 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:I.135, C:F.142, C:Y.249, C:Y.249, C:A.296 Hydrogen bonds: C:R.245, C:R.245, C:Q.308, C:Y.311, C:Y.316 LMN.4: 7 residues within 4Å: Chain C: L.45, H.145, F.215, Y.249, W.257, L.300 Ligands: LMN.3 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:L.300 Hydrogen bonds: C:Y.249 Salt bridges: C:H.145, C:K.149, C:K.149 LMN.5: 15 residues within 4Å: Chain D: I.135, F.142, R.245, G.246, Y.249, N.250, L.253, A.296, N.297, L.300, L.303, I.304, W.307, Y.311 Ligands: LMN.6 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:I.135, D:F.142, D:Y.249, D:Y.249, D:A.296 Hydrogen bonds: D:R.245, D:R.245, D:Q.308, D:Y.311, D:Y.311, D:Y.316 LMN.6: 7 residues within 4Å: Chain D: L.45, H.145, F.215, Y.249, W.257, L.300 Ligands: LMN.5 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:L.300 Hydrogen bonds: D:Y.249 Salt bridges: D:H.145, D:K.149, D:K.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guardia, C.M. et al., Structure of Human ATG9A, the Only Transmembrane Protein of the Core Autophagy Machinery. Cell Rep (2020)

Release Date

2020-07-08

Peptides

Autophagy-related protein 9A: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
F

C
B

D
A

E
E

F
D

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Autophagy-related protein 9A