SMTL ID : 6wr4.1

Structure of human ATG9A, the only transmembrane protein of the core autophagy machinery

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

6 x LMN: Lauryl Maltose Neopentyl Glycol(Non-covalent)

LMN.1: 21 residues within 4Å: Chain A: I.135, A.139, F.142, R.245, G.246, Y.249, N.250, E.252, L.253, W.257, I.293, A.296, N.297, L.303, I.304, I.306, W.307, Q.308, Y.311, Y.316 Ligands: LMN.2 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:I.135, A:A.139, A:F.142, A:Y.249, A:I.293, A:A.296, A:I.306, A:W.307 Hydrogen bonds: A:R.245, A:R.245, A:R.245, A:R.245, A:Y.249, A:E.252, A:Q.308, A:Y.311, A:Y.311 Salt bridges: A:R.245, A:R.245, A:R.245 LMN.2: 7 residues within 4Å: Chain A: F.142, Y.249, L.253, W.257, E.266, L.300 Ligands: LMN.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.142, A:L.300 Hydrogen bonds: A:Y.249, A:Y.249 Salt bridges: A:K.149 LMN.3: 21 residues within 4Å: Chain B: I.135, A.139, F.142, R.245, G.246, Y.249, N.250, E.252, L.253, W.257, I.293, A.296, N.297, L.303, I.304, I.306, W.307, Q.308, Y.311, Y.316 Ligands: LMN.4 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:I.135, B:A.139, B:F.142, B:Y.249, B:I.293, B:A.296, B:I.306, B:W.307 Hydrogen bonds: B:R.245, B:R.245, B:R.245, B:R.245, B:Y.249, B:E.252, B:Q.308, B:Y.311, B:Y.311 Salt bridges: B:R.245, B:R.245, B:R.245 LMN.4: 7 residues within 4Å: Chain B: F.142, Y.249, L.253, W.257, E.266, L.300 Ligands: LMN.3 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.142, B:L.300 Hydrogen bonds: B:Y.249, B:Y.249 Salt bridges: B:K.149 LMN.5: 21 residues within 4Å: Chain C: I.135, A.139, F.142, R.245, G.246, Y.249, N.250, E.252, L.253, W.257, I.293, A.296, N.297, L.303, I.304, I.306, W.307, Q.308, Y.311, Y.316 Ligands: LMN.6 20 PLIP interactions: 20 interactions with chain C Hydrophobic interactions: C:I.135, C:A.139, C:F.142, C:Y.249, C:I.293, C:A.296, C:I.306, C:W.307 Hydrogen bonds: C:R.245, C:R.245, C:R.245, C:R.245, C:Y.249, C:E.252, C:Q.308, C:Y.311, C:Y.311 Salt bridges: C:R.245, C:R.245, C:R.245 LMN.6: 7 residues within 4Å: Chain C: F.142, Y.249, L.253, W.257, E.266, L.300 Ligands: LMN.5 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:F.142, C:L.300 Hydrogen bonds: C:Y.249, C:Y.249 Salt bridges: C:K.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guardia, C.M. et al., Structure of Human ATG9A, the Only Transmembrane Protein of the Core Autophagy Machinery. Cell Rep (2020)

Release Date

2020-07-08

Peptides

Autophagy-related protein 9A: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
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Autophagy-related protein 9A

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