SMTL ID : 6wsh.1

Crystal structure of EutV from Enterococcus faecalis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: D.11, D.12, D.56, Q.58, M.59, K.106 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.12, A:D.56, A:Q.58, H2O.1 MG.7: 5 residues within 4Å: Chain B: D.12, D.56, Q.58, M.59, K.106 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.12, B:D.56, B:Q.58, H2O.4

11 x NA: SODIUM ION(Non-functional Binders)

NA.2: 1 residues within 4Å: Chain A: R.179 No protein-ligand interaction detected (PLIP) NA.3: 4 residues within 4Å: Chain A: T.16, K.106, P.107, L.108 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.108 NA.4: 3 residues within 4Å: Chain A: D.135, S.138, L.139 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.135, A:D.135 NA.5: 3 residues within 4Å: Chain A: E.122, Q.126, L.129 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.122 NA.8: 7 residues within 4Å: Chain B: Q.49, P.50, Q.75, L.76, A.77, S.78, Q.128 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:P.50, B:S.78, B:Q.128 NA.9: 4 residues within 4Å: Chain A: T.127 Chain B: R.123, Q.126, T.127 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.127, B:R.123 NA.10: 2 residues within 4Å: Chain B: K.94, K.97 2 PLIP interactions: 2 interactions with chain B Water bridges: B:K.94, B:K.97 NA.11: 4 residues within 4Å: Chain B: R.21, I.25, E.30, V.31 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.30, B:V.31 NA.12: 2 residues within 4Å: Chain A: K.151 Chain B: E.162 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.162, A:K.151 Water bridges: B:K.151 NA.13: 4 residues within 4Å: Chain B: E.148, K.151, G.152, E.162 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.152, B:E.162 NA.14: 3 residues within 4Å: Chain B: Q.75, Q.128, L.131 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.75 Water bridges: B:S.132

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 14 residues within 4Å: Chain A: R.123, Q.126 Chain B: V.72, Q.75, A.77, S.78, S.79, I.80, G.99, L.101, G.124, T.127, Q.128, L.131 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.75, B:S.78, B:G.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Walshe, J.L. et al., Structural characterization of the ANTAR antiterminator domain bound to RNA. Nucleic Acids Res. (2022)

Release Date

2021-05-05

Peptides

Response regulator: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Response regulator

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