SMTL ID : 6wt2.1 (1 other biounit)

Crystal Structure of Putative NAD(P)H-Flavin Oxidoreductase from Neisseria meningitidis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x NIO: NICOTINIC ACID(Non-covalent)

NIO.1: 7 residues within 4Å: Chain A: S.49, V.50, R.109, F.127 Chain B: W.74, G.172 Ligands: FMN.7 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.50 Hydrogen bonds: A:V.50 Salt bridges: A:R.109, B:R.23 pi-Stacking: A:F.127 NIO.4: 7 residues within 4Å: Chain A: W.74, G.172 Chain B: S.49, V.50, R.109, F.127 Ligands: FMN.3 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:V.50 Hydrogen bonds: B:V.50 Salt bridges: B:R.109, A:R.23 pi-Stacking: B:F.127

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: R.23, H.24, I.209 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain B: R.23, H.24 Ligand excluded by PLIP

2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.3: 21 residues within 4Å: Chain A: R.19, K.20, S.21, R.23, G.75, Y.150, C.168, P.169, V.170, E.171, G.172, K.212, R.214 Chain B: P.47, S.48, S.49, G.51, R.109, Q.148, I.151 Ligands: NIO.4 20 PLIP interactions: 16 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:Y.150, A:P.169, B:I.151 Hydrogen bonds: A:S.21, A:S.21, A:S.21, A:S.21, A:R.23, A:G.75, A:E.171, A:G.172, B:S.48, B:R.109, B:R.109 Water bridges: A:R.23, A:R.23, A:K.212, A:K.212 Salt bridges: A:R.19, A:R.214 FMN.7: 22 residues within 4Å: Chain A: P.47, S.48, S.49, G.51, R.109, Q.148, I.151 Chain B: R.19, K.20, S.21, R.23, G.75, Y.150, C.168, P.169, V.170, E.171, G.172, K.212, R.214 Ligands: NIO.1, EDO.5 17 PLIP interactions: 13 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:Y.150, B:P.169, A:I.151 Hydrogen bonds: B:S.21, B:S.21, B:S.21, B:R.23, B:G.75, B:E.171, B:G.172, A:S.48 Water bridges: B:R.23, B:K.212, A:R.109, A:R.109 Salt bridges: B:R.19, B:R.214

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 7 residues within 4Å: Chain A: L.45 Chain B: R.19, K.20, T.211, K.212, R.214 Ligands: FMN.7 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.19, B:K.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Putative NAD(P)H-Flavin Oxidoreductase from Neisseria meningitidis. To Be Published

Release Date

2020-05-13

Peptides

Putative NAD(P)H-flavin oxidoreductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative NAD(P)H-flavin oxidoreductase

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