SMTL ID : 6wtb.1

Sort-Tagged Drosophila Cryptochrome

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.58 Å

Oligo State

homo-dimer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: R.282, S.310, M.311 Ligands: FAD.2 1 PLIP interactions: 1 Ligand-Ligand interactions Metal complexes: FAD.2 MG.3: 2 residues within 4Å: Chain A: A.583 Chain B: D.584 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.584 MG.4: 4 residues within 4Å: Chain B: R.282, S.310, M.311 Ligands: FAD.5 1 PLIP interactions: 1 Ligand-Ligand interactions Metal complexes: FAD.5

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.2: 23 residues within 4Å: Chain A: R.282, S.310, S.312, L.315, Q.356, L.357, W.359, R.360, F.363, W.420, L.421, H.423, R.426, N.427, D.455, A.456, D.457, V.460, C.461, N.464, W.465, F.579 Ligands: MG.1 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:R.426, A:N.464 Hydrogen bonds: A:R.282, A:S.310, A:Q.356, A:R.426, A:D.455, A:A.456, A:D.457, A:D.457, A:N.464, A:N.464 Water bridges: A:S.312, A:H.423 Salt bridges: A:R.282 pi-Cation interactions: A:R.426, A:R.426 FAD.5: 25 residues within 4Å: Chain B: R.282, S.310, S.312, L.315, Q.356, L.357, W.359, R.360, F.363, W.420, L.421, H.423, R.426, N.427, F.449, L.453, D.455, A.456, D.457, V.460, C.461, N.464, W.465, F.579 Ligands: MG.4 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:R.426, B:F.449, B:N.464 Hydrogen bonds: B:S.310, B:S.310, B:Q.356, B:H.423, B:R.426, B:D.455, B:A.456, B:D.457, B:D.457, B:N.464, B:N.464 Water bridges: B:S.312, B:R.360, B:H.423 Salt bridges: B:R.282 pi-Cation interactions: B:R.426

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chandrasekaran, S. et al., Tuning flavin environment to detect and control light-induced conformational switching in Drosophila cryptochrome. Commun Biol (2021)

Release Date

2021-05-05

Peptides

Cryptochrome-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cryptochrome-1