SMTL ID : 6wv3.1

Human VKOR with warfarin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

3 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-functional Binders)(Non-covalent)

OLC.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) OLC.2: 13 residues within 4Å: Chain A: S.163, F.203, N.220, S.221, F.223, G.224, F.227, Y.228, S.253, S.257, T.278, N.282 Ligands: SWF.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.203, A:F.227 Hydrogen bonds: A:S.163, A:N.282 OLC.3: 4 residues within 4Å: Chain A: V.161, Y.165, C.183, V.274 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.161, A:Y.165, A:Y.165 Hydrogen bonds: A:Y.165

1 x SWF: S-WARFARIN(Non-covalent)

SWF.4: 20 residues within 4Å: Chain A: A.166, V.194, F.195, S.197, W.199, G.200, F.203, N.220, S.221, S.257, L.260, I.263, L.264, L.268, V.274, C.275, T.278, Y.279, N.282 Ligands: OLC.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.194, A:F.195, A:W.199, A:F.203, A:N.220, A:L.260, A:L.260, A:I.263, A:L.264, A:L.268, A:V.274, A:T.278, A:Y.279 Hydrogen bonds: A:N.220

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, S. et al., Structural basis of antagonizing the vitamin K catalytic cycle for anticoagulation. Science (2021)

Release Date

2020-11-11

Peptides

Vitamin K epoxide reductase, termini restrained by green fluorescent protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Vitamin K epoxide reductase, termini restrained by green fluorescent protein

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