SMTL ID : 6wvx.1 (1 other biounit)

Crystal structure of the first bromodomain of human BRD4 with benzodiazepine inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x UDV: 6'-(4-chlorophenyl)-1'-methyl-8'-(1-methyl-1H-pyrazol-4-yl)spiro[cyclopropane-1,4'-[1,2,4]triazolo[4,3-a][1,4]benzodiazepine](Non-covalent)

UDV.1: 12 residues within 4Å: Chain A: W.41, P.42, F.43, V.47, L.52, L.54, C.96, Y.99, N.100, D.105, I.106, M.109 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.41, A:P.42, A:F.43, A:V.47, A:L.52, A:L.54, A:Y.99, A:I.106, A:I.106 Hydrogen bonds: A:N.100 pi-Stacking: A:W.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eron, S.J. et al., Structural Characterization of Degrader-Induced Ternary Complexes Using Hydrogen-Deuterium Exchange Mass Spectrometry and Computational Modeling: Implications for Structure-Based Design. Acs Chem.Biol. (2021)

Release Date

2021-09-01

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

Related Entries With Identical Sequence