SMTL ID : 6wx4.1

Crystal structure of the SARS CoV-2 Papain-like protease in complex with peptide inhibitor VIR251

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x ACY- 73O- DPP- GLY- GVE: VIR251(Non-covalent)

ACY-73O-DPP-GLY-GVE.1: 16 residues within 4Å: Chain A: W.108, N.111, C.113, Y.114, L.164, G.165, D.166, P.249, P.250, Y.266, Y.270, Q.271, C.272, G.273, H.274, Y.275 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:P.249, A:P.250, A:Y.266, A:Y.270 Hydrogen bonds: A:G.165, A:G.165, A:D.166, A:Y.266, A:Y.270, A:G.273, A:G.273 Water bridges: A:N.111, A:N.112 Salt bridges: A:H.274 pi-Stacking: A:Y.266

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.191, C.194, C.226, C.228 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.191, A:C.194, A:C.226, A:C.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rut, W. et al., Activity profiling and crystal structures of inhibitor-bound SARS-CoV-2 papain-like protease: A framework for anti-COVID-19 drug design. Sci Adv (2020)

Release Date

2020-05-20

Peptides

Non-structural protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Non-structural protein 3

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