SMTL ID : 6wyc.1

Crystal Structure of Chlamydia trachomatis Glyceraldehyde 3-phosphate dehydrogenase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 19 residues within 4Å: Chain A: G.7, F.8, G.9, R.10, I.11, N.32, D.33, L.34, K.77, S.95, T.96, G.97, L.98, T.119, A.120, C.150, A.181, N.314, Y.318 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.11, A:Y.318 Hydrogen bonds: A:F.8, A:R.10, A:I.11, A:N.32, A:K.77, A:N.314 Water bridges: A:N.6, A:G.9, A:G.12, A:G.97, A:T.119, A:T.180, A:A.181 NAD.2: 19 residues within 4Å: Chain B: G.7, F.8, G.9, R.10, I.11, N.32, D.33, L.34, K.77, S.95, T.96, G.97, L.98, T.119, A.120, C.150, A.181, N.314, Y.318 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:I.11, B:I.11, B:Y.318 Hydrogen bonds: B:F.8, B:R.10, B:I.11, B:N.32, B:K.77, B:N.314 Water bridges: B:N.6, B:F.8, B:G.9, B:G.12, B:R.13, B:G.97, B:T.119 NAD.3: 19 residues within 4Å: Chain C: G.7, F.8, G.9, R.10, I.11, N.32, D.33, L.34, K.77, S.95, T.96, G.97, L.98, T.119, A.120, C.150, A.181, N.314, Y.318 19 PLIP interactions: 18 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:I.11, C:I.11, C:Y.318 Hydrogen bonds: C:F.8, C:R.10, C:I.11, C:N.32, C:K.77, C:T.119, C:N.314 Water bridges: C:N.6, C:F.8, C:G.9, C:G.12, C:G.97, C:T.119, C:A.181, C:A.181, A:D.187 NAD.4: 20 residues within 4Å: Chain D: G.7, F.8, G.9, R.10, I.11, N.32, D.33, L.34, K.77, S.95, T.96, G.97, L.98, F.99, T.119, A.120, C.150, A.181, N.314, Y.318 20 PLIP interactions: 1 interactions with chain B, 19 interactions with chain D Water bridges: B:D.187, D:N.6, D:F.8, D:G.9, D:G.12, D:G.97, D:G.97, D:T.119, D:T.180, D:A.181 Hydrophobic interactions: D:I.11, D:I.11, D:Y.318 Hydrogen bonds: D:F.8, D:R.10, D:I.11, D:N.32, D:K.77, D:T.119, D:N.314

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schormann, N. et al., Chlamydia trachomatis glyceraldehyde 3-phosphate dehydrogenase: Enzyme kinetics, high-resolution crystal structure, and plasminogen binding. Protein Sci. (2020)

Release Date

2020-11-04

Peptides

Glyceraldehyde-3-phosphate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Glyceraldehyde-3-phosphate dehydrogenase

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