SMTL ID : 6wye.1 (1 other biounit)

Crystal structure of Neisseria gonorrhoeae serine acetyltransferase (CysE)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

homo-hexamer

Ligands

6 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: Y.114, D.117, P.118, C.120 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.113, A:D.117 NA.4: 4 residues within 4Å: Chain B: Y.114, D.117, P.118, C.120 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.117 NA.5: 4 residues within 4Å: Chain C: Y.114, D.117, P.118, C.120 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Y.114, C:D.117 NA.8: 4 residues within 4Å: Chain D: Y.114, D.117, P.118, C.120 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:D.117 NA.9: 4 residues within 4Å: Chain E: Y.114, D.117, P.118, C.120 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:Y.114, E:C.120 NA.11: 4 residues within 4Å: Chain F: Y.114, D.117, P.118, C.120 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:C.120, F:C.120

6 x LMR: (2S)-2-hydroxybutanedioic acid(Non-covalent)

LMR.2: 9 residues within 4Å: Chain A: D.117, P.118, A.119, D.182, H.183 Chain B: G.208, G.209, R.217, H.218 10 PLIP interactions: 6 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:G.209, A:D.117, A:D.117, A:A.119 Water bridges: B:E.191, B:R.217 Salt bridges: B:R.217, B:H.218, B:H.218, A:H.183 LMR.3: 9 residues within 4Å: Chain A: G.208, G.209, R.217, H.218 Chain E: D.117, P.118, A.119, D.182, H.183 10 PLIP interactions: 6 interactions with chain A, 4 interactions with chain E Hydrogen bonds: A:G.209, E:D.117, E:D.117, E:A.119 Water bridges: A:E.191, A:R.217 Salt bridges: A:R.217, A:H.218, A:H.218, E:H.183 LMR.6: 9 residues within 4Å: Chain C: D.117, P.118, A.119, D.182, H.183 Chain D: G.208, G.209, R.217, H.218 10 PLIP interactions: 6 interactions with chain D, 4 interactions with chain C Hydrogen bonds: D:G.209, C:D.117, C:D.117, C:A.119 Water bridges: D:E.191, D:R.217 Salt bridges: D:R.217, D:H.218, D:H.218, C:H.183 LMR.7: 9 residues within 4Å: Chain C: G.208, G.209, R.217, H.218 Chain F: D.117, P.118, A.119, D.182, H.183 10 PLIP interactions: 6 interactions with chain C, 4 interactions with chain F Hydrogen bonds: C:G.209, F:D.117, F:D.117, F:A.119 Water bridges: C:E.191, C:R.217 Salt bridges: C:R.217, C:H.218, C:H.218, F:H.183 LMR.10: 9 residues within 4Å: Chain B: D.117, P.118, A.119, D.182, H.183 Chain E: G.208, G.209, R.217, H.218 10 PLIP interactions: 4 interactions with chain B, 6 interactions with chain E Hydrogen bonds: B:D.117, B:D.117, B:A.119, E:G.209 Salt bridges: B:H.183, E:R.217, E:H.218, E:H.218 Water bridges: E:R.217, E:R.217 LMR.12: 9 residues within 4Å: Chain D: D.117, P.118, A.119, D.182, H.183 Chain F: G.208, G.209, R.217, H.218 11 PLIP interactions: 6 interactions with chain F, 5 interactions with chain D Hydrogen bonds: F:G.209, D:D.117, D:D.117, D:A.119 Water bridges: F:R.217, F:R.217, D:H.183 Salt bridges: F:R.217, F:H.218, F:H.218, D:H.183

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oldham, K.E.A. et al., Serine acetyltransferase from Neisseria gonorrhoeae; structural and biochemical basis of inhibition. Biochem.J. (2022)

Release Date

2021-06-09

Peptides

Serine acetyltransferase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
A

D
C

E
E

F
E

Serine acetyltransferase

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