SMTL ID : 6wzk.1

LY3041658 Fab bound to CXCL3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-2-2-2-mer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: Y.158, E.161, P.162, V.163, P.180, A.181, L.191 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.163, A:V.163, A:A.181 Water bridges: A:A.181 EDO.2: 6 residues within 4Å: Chain A: E.109, Y.110, Y.111 Chain B: Y.49, Y.50, R.53 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.53, A:Y.110 EDO.3: 4 residues within 4Å: Chain B: Y.49, S.54, V.55, S.56 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.56 Water bridges: A:Y.111 EDO.4: 6 residues within 4Å: Chain B: Q.37, R.45, L.47, I.58, P.59, F.62 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.37, B:R.45, B:R.45 Water bridges: B:R.61 EDO.6: 6 residues within 4Å: Chain C: E.161, P.162, V.163, P.180, A.181, L.191 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:V.163, C:V.163, C:A.181 EDO.7: 4 residues within 4Å: Chain C: V.2, Y.27, Y.32, R.98 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Y.32, C:Y.32, C:R.98, C:R.98 EDO.8: 7 residues within 4Å: Chain D: Q.37, R.45, L.47, I.58, P.59, R.61, F.62 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:Q.37, D:R.45 Water bridges: D:R.61

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 4 residues within 4Å: Chain C: N.168, S.169, T.208, N.210 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:T.208 Hydrogen bonds: C:T.208 Water bridges: C:T.208

1 x MG: MAGNESIUM ION(Non-covalent)

MG.9: 1 residues within 4Å: Chain D: E.79 4 PLIP interactions: 1 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:E.79, H2O.23, H2O.24, H2O.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boyles, J.S. et al., Discovery and characterization of a neutralizing pan-ELR+CXC chemokine monoclonal antibody. Mabs

Release Date

2020-11-25

Peptides

LY3041658 Fab heavy chain: AC
LY3041658 Fab light chain: BD
C-X-C motif chemokine 3: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

E
E

F
F

LY3041658 Fab heavy chain

LY3041658 Fab light chain

C-X-C motif chemokine 3

Related Entries With Identical Sequence