SMTL ID : 6x19.1

Non peptide agonist CHU-128, bound to Glucagon-Like peptide-1 (GLP-1) Receptor

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x UK1: 3-{(1S)-1-[5-(2,2-dimethylmorpholin-4-yl)-2-{(4S)-2-(4-fluoro-3,5-dimethylphenyl)-3-[3-(4-fluoro-1-methyl-1H-indazol-5-yl)-2-oxo-2,3-dihydro-1H-imidazol-1-yl]-4-methyl-2,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridine-5-carbonyl}-1H-indol-1-yl]butyl}-1,2,4-oxadiazol-5(4H)-one(Non-covalent)

UK1.1: 22 residues within 4Å: Chain E: S.40, W.42, E.43, P.146, E.147, L.150, L.153, Y.154, Y.157, K.206, D.207, L.210, K.211, Y.214, Y.229, C.235, V.238, F.239, M.242, T.307, N.309, L.397 23 PLIP interactions: 23 interactions with chain E Hydrophobic interactions: E:W.42, E:W.42, E:W.42, E:P.146, E:E.147, E:L.150, E:L.150, E:L.150, E:L.153, E:Y.154, E:V.238, E:V.238, E:F.239, E:T.307, E:T.307, E:L.397 Hydrogen bonds: E:E.147, E:K.206, E:K.206, E:Y.229 pi-Stacking: E:Y.154, E:F.239 pi-Cation interactions: E:K.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, X. et al., Differential GLP-1R Binding and Activation by Peptide and Non-peptide Agonists. Mol.Cell (2020)

Release Date

2020-09-09

Peptides

Guanine nucleotide-binding protein G(s) subunit alpha isoforms short: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
Nanobody35: D
Glucagon-like peptide 1 receptor: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

D
N

E
R

Membrane

We predict this structure to be a membrane protein.
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Guanine nucleotide-binding protein G(s) subunit alpha isoforms short

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Nanobody35

Glucagon-like peptide 1 receptor

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