SMTL ID : 6x5x.1

Crystal structure o BmooMP-I, a P-I metalloproteinase from Bothrops moojeni

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: E.8, D.92, C.195, N.198 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.8, A:D.92, A:C.195, H2O.2, H2O.6

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: H.141, H.145, H.151 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.141, A:H.145, A:H.151, H2O.2, H2O.6

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 2 residues within 4Å: Chain A: S.90, Q.194 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.90

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: R.109, R.111 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.109, A:R.109, A:R.111, A:R.111 Salt bridges: A:R.109, A:R.111 SO4.5: 5 residues within 4Å: Chain A: S.129, K.130, N.131, W.134, K.170 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.130, A:N.131 Water bridges: A:K.170, A:K.170 Salt bridges: A:K.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Salvador, G.H.M. et al., Biochemical, pharmacological and structural characterization of BmooMP-I, a new P-I metalloproteinase from Bothrops moojeni venom. Biochimie (2020)

Release Date

2020-10-07

Peptides

Snake venom metalloproteinase BmooMP-I: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Snake venom metalloproteinase BmooMP-I