SMTL ID : 6x6d.1

Glucocorticoid Receptor DNA binding domain in complex with unmodified precursor for a modern recognition element (pre-GBS)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.48 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain A: C.5, V.7, C.8, D.10, C.22, C.25, R.54 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.5, A:C.8, A:C.22, A:C.25 ZN.2: 5 residues within 4Å: Chain A: C.41, N.45, C.47, C.57, C.60 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.41, A:C.47, A:C.57, A:C.60 ZN.3: 7 residues within 4Å: Chain B: C.5, V.7, C.8, D.10, C.22, C.25, R.54 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.5, B:C.8, B:C.22, B:C.25 ZN.4: 5 residues within 4Å: Chain B: C.41, N.45, C.47, C.57, C.60 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.41, B:C.47, B:C.57, B:C.60

1 x CAC: CACODYLATE ION(Non-functional Binders)

CAC.5: 3 residues within 4Å: Chain C: G.8, G.9 Chain D: G.13 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, X. et al., Structural basis for glucocorticoid receptor recognition of both unmodified and methylated binding sites, precursors of a modern recognition element. Nucleic Acids Res. (2021)

Release Date

2021-06-02

Peptides

Glucocorticoid receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glucocorticoid receptor