SMTL ID : 6x77.1

Rev1 R518A Ternary Complex with dCTP and Ca2+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 7 residues within 4Å: Chain A: G.12 Chain C: D.58, S.161, D.163, E.164 Ligands: CA.3, DCP.4 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.58, C:D.163, C:E.164 CA.2: 6 residues within 4Å: Chain A: A.11 Chain C: D.244, L.246, P.247, G.248, V.249 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.244, C:L.246, C:V.249, H2O.1, H2O.15 CA.3: 7 residues within 4Å: Chain C: D.58, F.59, F.62, D.163, K.221 Ligands: CA.1, DCP.4 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.58, C:D.58, C:F.59, C:D.163

1 x DCP: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE(Non-covalent)

DCP.4: 20 residues within 4Å: Chain A: G.12 Chain C: R.20, L.21, L.24, D.58, F.59, D.60, C.61, F.62, F.63, A.97, S.98, Y.101, R.104, N.110, G.111, D.163, K.221 Ligands: CA.1, CA.3 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:F.63 Hydrogen bonds: C:R.20, C:R.20, C:F.59, C:C.61, C:F.62, C:F.63, C:S.98, C:Y.101, C:N.110 Water bridges: C:D.58, C:R.104, C:R.104, C:R.104 Salt bridges: C:R.104, C:R.104, C:K.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weaver, T.M. et al., Visualizing Rev1 catalyze protein-template DNA synthesis. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-09-30

Peptides

DNA repair protein REV1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

DNA repair protein REV1